He Tan

Assistant Professor Computer Science

Computer Science and Informatics , School of Engineering

Doctor of Philosophy


Contact

E-mail
Room
E2422
Telephone
+46 36-10 1911
Signature/Short name
TANHE
Schedule
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Boards, committees etc.

Research

Focus of my research is to explore synergies between semantic technologies and text mining techniques. My current research interests include,

  • Text Mining: Ontological NLP, Text Learning
  • Semantic Technologies: Semantic Data Integration, Semantic Modeling, Ontology Learning & Population, Ontology Alignment
  • Life Sciences: Literature Mining, and applications to diseases Informatics

Biography

From 2003 to 2007 He Tan did PhD studies at Department of Computer and Information Science (IDA), Linköping University. In September 2007, She received her PhD from LiTH (the Institute of Technology), at Linköping University. From 2007 to 2011 Tan started work as Postdoctoral fellow at IDA, at Linköping University.

During 2010 She worked as a vising researcher at the Tsujii Laboratory, Department of Computer Science, University of Tokyo, Japan. Since January 2012 she is working as Assistant Professor in Information Engineering at the School of Engineering, Jönköping University.

Article

Tarasov, V., Tan, H., Jarfors, A., Seifeddine, S. (2019). Fuzzy logic-based modelling of yield strength of as-cast A356 alloy Neural computing & applications (Print). More information
Tan, H., Tarasov, V., Jarfors, A., Seifeddine, S. (2019). Fuzzy Logic Based Modelling of Cast Component Properties IFAC-PapersOnLine, 52(13), 1132-1137. More information
Lambrix, P., Tan, H. (2007). A Tool for Evaluating Ontology Alignment Strategies , VIII, 182-202. More information
Strömbäck, L., Jakoniené, V., Tan, H., Lambrix, P. (2006). Representing, storing and accessing molecular interaction data: a review of models and tools Briefings in Bioinformatics, 7(4), 331-338. More information
Lambrix, P., Tan, H. (2006). SAMBO - A System for Aligning and Merging Biomedical Ontologies Journal of Web Semantics, 4(3), 196-206. More information

Book chapter

Tarasov, V., Tan, H., Ismail, M., Adlemo, A., Johansson, M. (2017). Application of inference rules to a software requirements ontology to generate software test cases. In: Dragoni, Mauro; Poveda-Villalón, María; Jimenez-Ruiz, Ernesto (Ed.), OWL: Experiences and Directions – Reasoner Evaluation: 13th International Workshop, OWLED 2016, and 5th International Workshop, ORE 2016, Bologna, Italy, November 20, 2016, Revised Selected Papers (pp. 82 -94). Cham: Springer More information
Tan, H. (2012). Semantic Role Labeling for Biological Event. In: Patrick Lambrix (Ed.), Advances in Secure and Networked Information Systems - The ADIT Perspective: Festschrift in honor of professor Nahid Shahmehri (pp. 165 -174). Linköping: Linköping University Electronic Press More information
Lambrix, P., Strömbäck, L., Tan, H. (2009). Information integration in bioinformatics with ontologies and standards. In: Semantic Techniques for the Web: The REWERSE perspective (pp. 343 -376). Berlin: Springer More information
Lambrix, P., Tan, H. (2008). Ontology alignment and merging. In: Anatomy Ontologies for Bioinformatics: Principles and Practice (pp. 133 -150). More information
Lambrix, P., Tan, H., Jakoniené, V., Strömbäck, L. (2007). Biological Ontologies. In: Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences (pp. 85 -99). Berlin: Springer More information
Lambrix, P., Tan, H. (2005). Merging DAML+OIL Ontologies. In: Databases and Information Systems (Selected Papers from the Sixth International Baltic Conference DB&IS'2004) (pp. 249 -258). Amsterdam: IOS Press More information

Conference paper

Tarasov, V., Tan, H., Adlemo, A. (2019). Automation of software testing process using ontologies. 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, September 17-19, 2019, Vienna, Austria. More information
Tan, H., Tarasov, V., Adlemo, A. (2019). Lessons Learned from an Application of Ontologies in Software Testing. JOWO 2019, The Joint Ontology Workshops, Graz, Austria, September 23-25, 2019.. More information
Adlemo, A., Tan, H., Tarasov, V. (2018). Test case quality as perceived in Sweden. 2018 ACM/IEEE 5th International Workshop on Requirements Engineering and Testing, Gothenburg, Sweden, June 02, 2018. More information
Tan, H., Adlemo, A., Tarasov, V., Johansson, M. (2017). Evaluation of an Application Ontology. Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology Bozen-Bolzano, Italy, September 21–23, 2017. More information
Tan, H., Ismail, M., Tarasov, V., Adlemo, A., Johansson, M. (2016). Development and evaluation of a software requirements ontology. 7th International Workshop on Software Knowledge - SKY 2016 in conjunction with the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - IC3K 2016, November 9-10, 2016, in Porto, Portugal. More information
Resmini, A., Tan, H., Tarasov, V., Adlemo, A. (2016). #ViewFromTheOffice - Reconceptualizing the Workplace as an Information-based Ecosystem. 6th STS Conference on Socio-technical Ecosystems. More information
Tarasov, V., Tan, H., Adlemo, A., Ismail, M., Mats, J., Olsson, D. (2015). Ontology-based Software Test Case Generation (OSTAG). European Projects in Knowledge Applications and Intelligent Systems, July 20-23, 2016, Lisbon, Portugal. More information
Tan, H., Resmini, A., Tarasov, V., Adlemo, A. (2015). Workplace innovation in Swedish local organizations - technology aspect: BIS 2015 International Workshops, Poznań, Poland, June 24-26, 2015, Revised Papers. 18th International Workshop on Business Information Systems (BIS), June 24-26, 2015, Poznan, Poland. More information
Tan, H., Barakat, G., Tarasov, V. (2015). Translating XML Models into OWL Ontologies for Interoperability of Simulation Systems. 3rd Workshop on Ontologies and Information Systems (WOIS 2015), Tartu, Estonia, August 26, 2015. More information
Tan, H. (2014). A Method for Building FrameNet-like Corpus for the Biomedical Domain. 14th Conference of the European Chapter of the Association for Computational Linguistics. More information
Tan, H., Kaliyaperumal, R., Benis, N. (2012). Ontology-driven Construction of Corpus with Frame Semantics Annotations. 13th International Conference, CICLing 2012, New Delhi, India, March 11-17, 2012. More information
Tan, H., Chowdari, S. (2012). Semantic Role Labeling for Biological Transport. AAAI 2012 Fall Symposium on Information Retrieval and Knowledge Discovery in Biomedical Text. More information
Tan, H., Kaliyaperumal, R., Benis, N. (2011). Building frame-based corpus on the basis of ontological domain knowledge. BioNLP 2011, 23-24 June, 2011, Portland, Oregon, USA. More information
Tan, H., Kaliyaperumal, R., Benis, N. (2011). Ontology-driven Construction of Corpus with Frame Semantics Annotations. The Fourth International Symposium on Languages in Biology and Medicine. More information
Tan, H. (2010). A study on the relation between linguistics-oriented and domain-specific semantics. 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences. More information
Lambrix, P., Liu, Q., Tan, H. (2009). A system for repairing missing is-a structure in ontologies. SWAT4LS 2009: Amsterdam, The Netherlands. More information
Lambrix, P., Liu, Q., Tan, H. (2009). Aligning anatomy ontologies in the Ontology Alignment Evaluation Initiative. 25th Annual Workshop of the Swedish Artificial Intelligence Society. More information
Lambrix, P., Liu, Q., Tan, H. (2009). Repairing the missing is-a structure of ontologies. 4th Asian Semantic Web Conference - ASWC09. More information
Lambrix, P., Liu, Q., Tan, H. (2009). RepOSE: an environment for repairing missing ontological structure. 4th Asian Semantic Web Conference. More information
Tan, H., Lambrix, P. (2009). Selecting an ontology for biomedical text mining. 17th Conference on Intelligent Systems for Molecular Biology, June 27 to July 2, 2009, Stockholm, Sweden. More information
Tan, H., Lambrix, P. (2009). Selecting an ontology for biomedical text mining. BioNLP 2009, June 4-5, Boulder, Colorado. More information
Tan, H. (2008). Knowledge-based gene symbol disambiguation. Second International Workshop on Data and Text Mining in Bioinformatics, 2008, DTMBIO '08. More information
Lambrix, P., Tan, H., Xu, W. (2008). Literature-based alignment of ontologies. The Third International Workshop on Ontology Matching collocated with the 7th International Semantic Web Conference, October 26 – 30, 2008, Karlsruhe, Germany. More information
Lambrix, P., Tan, H., Liu, Q. (2008). SAMBO and SAMBOdtf results for the Ontology Alignment Evaluation Initiative 2008. The Third International Workshop on Ontology Matching collocated with the 7th International Semantic Web Conference, October 26 – 30, 2008, Karlsruhe, Germany. More information
Tan, H., Lambrix, P. (2007). A method for recommending ontology alignment strategies. International Semantic Web Conference. More information
Lambrix, P., Tan, H. (2007). Aligning Biomedical Ontologies. International Workshop, Integrative Bioinformatics, 4th annual meeting, 10th to 12th September, 2007, University of Ghent, Belgium. More information
Tan, H., Lambrix, P. (2007). SAMBO results for the Ontology Alignment Evaluation Initiative 2007. The Second International Workshop on Ontology Matching collocated with the 6th International Semantic Web Conference (ISWC-2007), November 11, 2007: BEXCO, Busan, Korea. More information
Wächter, T., Tan, H., Wobst, A., Lambrix, P., Schroeder, M. (2006). A Corpus-driven Approach for Design, Evolution and Alignment of Ontologies. Winter Simulation Conference, 3-6 Dec., 2006. More information
Tan, H., Jakoniené, V., Lambrix, P., Åberg, J., Shahmehri, N. (2006). Alignment of Biomedical Ontologies using Life Science Literature. International Workshop on Knowledge Discovery in Life Science Literature 2006 (KDLL 2006). More information
Tan, H., Lambrix, P. (2006). Aligning and merging biomedical ontologies. Seventh Swedish Bioinformatics Workshop for PhD students and PostDocs, Stockholm, November 24-25, 2006. More information
Chen, B., Tan, H., Lambrix, P. (2006). Structure-Based Filtering for Ontology Alignment. 15th IEEE WETICE Workshop on Semantic Technologies in Collaborative Applications. More information
Lambrix, P., Tan, H. (2005). A Framework for Aligning Ontologies. Third International Workshop, PPSWR 2005, Dagstuhl Castle, Germany, September 11-16, 2005. More information
Lambrix, P., Tan, H. (2004). A semi-automatic tool for merging bio-ontologies. Fourth Swedish Bioinformatics Workshop for PhD students and PostDocs. More information
Lambrix, P., Tan, H. (2004). Merging DAML+OIL Ontologies. Sixth International Baltic Conference on Databases and Information Systems, Riga, Latvia, 2004. More information
Lambrix, P., Tan, H. (2004). A Semi-Automatic Tool for Merging Bio-Ontologies. Bioinformatics 2004, Linköping, Sweden. More information
Lambrix, P., Edberg, A., Manis, C., Tan, H. (2003). Merging DAML+OIL bio-ontologies. 2003 International Workshop on Description Logics (DL2003). More information
Lambrix, P., Tan, H. (2003). A semi-automatic tool for merging bio-ontologies. 3rd Swedish annual bioinformatics workshop for PhD students and PostDocs. More information

Doctoral thesis

Tan, H. (2007). Aligning Biomedical Ontologies (Doctoral thesis, Linköping: Institutionen för datavetenskap). More information

Licentiate thesis

Tan, H. (2006). Aligning and Merging Biomedical Ontologies (Licentiate thesis, Linköping: Institutionen för datavetenskap). More information

Report

Backofen, R. Burger, A. Busch, A. Dawelbait, G. Fages, F. Jakoniené, V. , ... Will S. (2007). Implementation of prototypes. More information
Backofen, R. Badea, L. Barahona, P. Berndtsson, M. Burger, A. Dawelbait, G. , ... Will S. (2005). Requirements and specification of bioinformatics use cases. More information
Backofen, R. Mike, B. Barahona, P. Burger, A. Dawelbait, G. Doms, A. , ... Will S. (2005). Usage of bioinformatics tools and identification of information sources. More information

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